PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P22800_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HD-ZIP
Protein Properties Length: 265aa    MW: 29797.7 Da    PI: 9.4177
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P22800_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.7e-18101155256
                            T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            rk+ +++keq + Lee F+++++++ +++  L+++l+L  rqV vWFqNrRa+ k
  GSMUA_Achr8P22800_001 101 RKKLRLSKEQSDSLEESFKEHSTLNPKQKLALSEQLNLRPRQVEVWFQNRRARTK 155
                            678899***********************************************98 PP

2HD-ZIP_I/II117.86.2e-38101190191
            HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                            +kk+rlskeq+ +LEesF+e+++L+p++K +l+++L+l+prqv+vWFqnrRARtk+kq+E+ +e+L r++++l+een+rL+k+v+eLr
  GSMUA_Achr8P22800_001 101 RKKLRLSKEQSDSLEESFKEHSTLNPKQKLALSEQLNLRPRQVEVWFQNRRARTKLKQTEVHCEYLNRCCQTLMEENRRLQKKVAELR 188
                            69*************************************************************************************9 PP

            HD-ZIP_I/II  89 eel 91 
                             +l
  GSMUA_Achr8P22800_001 189 -AL 190
                            .55 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.42E-1793158IPR009057Homeodomain-like
PROSITE profilePS5007116.48797157IPR001356Homeobox domain
SMARTSM003891.2E-1399161IPR001356Homeobox domain
PfamPF000461.8E-15101155IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.2E-17101155IPR009057Homeodomain-like
CDDcd000865.00E-15101158No hitNo description
PROSITE patternPS000270132155IPR017970Homeobox, conserved site
PfamPF021833.0E-7157190IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.6E-17157200IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MTKERNKSLQ PKEGDMNLGR DARTYLEANV ECSDSPVSNF VVVTAILPGG RGCGTTKGLL  60
TDHWVRWRER ERERERADKM WVGVVQASSR VSDEEENGLV RKKLRLSKEQ SDSLEESFKE  120
HSTLNPKQKL ALSEQLNLRP RQVEVWFQNR RARTKLKQTE VHCEYLNRCC QTLMEENRRL  180
QKKVAELRAL QTSCHDFSMH LPATTLSMCP SCERVAPTPT SNSASAAAAS DHQPNSFSAL  240
IPKPRPSSLA VQPAPAASRQ SSPAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16575RWRERERERER
2149157RRARTKLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009414099.11e-126PREDICTED: homeobox-leucine zipper protein HOX11-like
SwissprotA2Z1U13e-71HOX11_ORYSI; Homeobox-leucine zipper protein HOX11
SwissprotQ67UE29e-71HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
TrEMBLM0TST30.0M0TST3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P22800_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52093363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-64homeobox from Arabidopsis thaliana